When users want to show and reconcile both the Payment and Deposit transactions separately in the Reconcile Bank Statement page.
Selecting a Bank Account in the New Payment page means that the payment has already been deposited. This will set the Payment Status to Deposited but only generate a Payment without the Deposit transaction during Bank Reconciliation.
If users would like to show and reconcile both the Payment and Deposit transactions in the Reconcile Bank Statement page, they can select he Undep. Funds radio button when applying the payment, then navigate to Transactions > Bank > Make Deposits to record the Deposit separately.